Variant report

Variant	rs12527150
Chromosome Location	chr6:161541909-161541910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1001421	1.00[CHB][hapmap]
rs1001422	1.00[CHB][hapmap]
rs1001756	1.00[CHB][hapmap]
rs11751634	1.00[CHB][hapmap]
rs11751843	1.00[CHB][hapmap]
rs11752188	1.00[CHB][hapmap]
rs11757223	1.00[CHB][hapmap]
rs11757309	1.00[CHB][hapmap]
rs11757882	1.00[CHB][hapmap]
rs11758794	1.00[CHB][hapmap]
rs11759408	1.00[CHB][hapmap]
rs11962121	1.00[CHB][hapmap]
rs12110827	1.00[CHB][hapmap]
rs1404269	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464781	1.00[CHB][hapmap]
rs1534020	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562025	1.00[CHB][hapmap]
rs1569937	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1807426	1.00[CHB][hapmap]
rs1822520	1.00[ASN][1000 genomes]
rs2009830	1.00[CHB][hapmap]
rs2177587	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314190	1.00[CHB][hapmap]
rs2314376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2314377	1.00[CHB][hapmap]
rs3778218	1.00[CHB][hapmap]
rs3778225	1.00[CHB][hapmap]
rs3798916	1.00[CHB][hapmap]
rs3823057	1.00[CHB][hapmap]
rs4709494	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6905734	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919510	1.00[ASN][1000 genomes]
rs6940321	1.00[CHB][hapmap]
rs7754215	1.00[CHB][hapmap]
rs9365245	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs9365252	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9456635	1.00[CHB][hapmap]
rs9458121	1.00[CHB][hapmap]
rs9458135	1.00[CHB][hapmap]
rs9458141	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030045	chr6:161359075-161562255	Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv886817	chr6:161371621-161846654	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3381361	chr6:161373617-161864101	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1023982	chr6:161382188-161549831	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv1030852	chr6:161477750-161589394	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161494400-161542400	Strong transcription	Duodenum Mucosa	Duodenum
2	chr6:161514000-161544600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:161517600-161543000	Strong transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:161517800-161542200	Strong transcription	Liver	Liver
5	chr6:161522400-161542400	Strong transcription	Stomach Smooth Muscle	stomach
6	chr6:161526600-161542200	Strong transcription	Adipose Nuclei	Adipose
7	chr6:161527000-161543000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:161527200-161542800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:161527400-161543600	Strong transcription	Fetal Lung	lung
10	chr6:161527600-161547800	Weak transcription	Right Atrium	heart
11	chr6:161528600-161542000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:161528600-161544800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:161529600-161547600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:161533200-161542800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:161533200-161543400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:161533600-161542000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr6:161533600-161543200	Strong transcription	Primary T cells from cord blood	blood
18	chr6:161533800-161542800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:161534000-161549800	Weak transcription	Stomach Mucosa	stomach
20	chr6:161534600-161547200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:161534600-161555800	Weak transcription	A549	lung
22	chr6:161534600-161559800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:161536000-161543800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:161537000-161546400	Weak transcription	NH-A	brain
25	chr6:161537600-161556800	Weak transcription	Gastric	stomach
26	chr6:161537800-161548200	Weak transcription	Small Intestine	intestine
27	chr6:161538200-161543400	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:161538200-161544200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:161538200-161544200	Weak transcription	Brain Angular Gyrus	brain
30	chr6:161538200-161547800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr6:161538200-161548000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:161538200-161548000	Weak transcription	Aorta	Aorta
33	chr6:161538200-161549400	Weak transcription	NHEK	skin
34	chr6:161538200-161559600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:161538400-161543800	Weak transcription	GM12878-XiMat	blood
36	chr6:161538400-161547400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:161538400-161547800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:161538400-161548000	Weak transcription	Lung	lung
39	chr6:161538400-161549400	Weak transcription	HSMMtube	muscle
40	chr6:161538400-161553000	Weak transcription	Spleen	Spleen
41	chr6:161538400-161557800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:161538400-161558400	Weak transcription	HMEC	breast
43	chr6:161538600-161543800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr6:161538600-161547400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:161538600-161547400	Weak transcription	Fetal Stomach	stomach
46	chr6:161538600-161547400	Weak transcription	Thymus	Thymus
47	chr6:161538600-161547600	Weak transcription	Fetal Thymus	thymus
48	chr6:161538600-161547800	Weak transcription	Esophagus	oesophagus
49	chr6:161538600-161547800	Weak transcription	Right Ventricle	heart
50	chr6:161538600-161552600	Weak transcription	Pancreas	Pancrea

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