Variant report

Variant	rs12527726
Chromosome Location	chr6:44349813-44349814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10948136	0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11571946	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11571962	0.82[ASN][1000 genomes]
rs12527053	0.83[ASN][1000 genomes]
rs12528170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16871832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16871837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3757288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4711782	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9369482	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	esv1794353	chr6:44333489-44350716	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44341800-44354600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:44343200-44351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:44346600-44354200	Weak transcription	HepG2	liver
4	chr6:44348600-44350400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:44348600-44351000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:44348800-44354400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:44349000-44354200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:44349200-44350200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:44349400-44350000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:44349400-44350000	Enhancers	Adipose Nuclei	Adipose
11	chr6:44349400-44350200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:44349400-44350200	Flanking Active TSS	Liver	Liver
13	chr6:44349400-44350200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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