Variant report

Variant	rs12527777
Chromosome Location	chr6:73483017-73483018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs4706513	0.82[EUR][1000 genomes]
rs4707987	0.81[AMR][1000 genomes]
rs6904110	0.82[AMR][1000 genomes]
rs6904313	0.82[AMR][1000 genomes]
rs6906378	0.82[AMR][1000 genomes]
rs6926416	0.82[AMR][1000 genomes]
rs6926423	0.81[AMR][1000 genomes]
rs6940084	0.82[AMR][1000 genomes]
rs7746825	0.82[AMR][1000 genomes]
rs7751090	0.84[AMR][1000 genomes]
rs7752076	0.82[AMR][1000 genomes]
rs7775641	0.82[AMR][1000 genomes]
rs9341387	0.82[AMR][1000 genomes]
rs9360597	0.82[AMR][1000 genomes]
rs9442847	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas
3	chr6:73479600-73487200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73480200-73484600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:73480800-73493800	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73482400-73485000	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links