Variant report

Variant	rs12528084
Chromosome Location	chr6:150551243-150551244
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150549697..150551669-chr6:150591233..150592989,2	K562	blood:
2	chr6:150525124..150527770-chr6:150549822..150552808,2	K562	blood:
3	chr6:150549533..150552708-chr6:150557386..150559321,3	K562	blood:
4	chr6:150543237..150546880-chr6:150548388..150552037,4	K562	blood:
5	chr6:150548351..150551820-chr6:150552592..150556737,3	K562	blood:
6	chr6:150542106..150544405-chr6:150549647..150551463,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12526741	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs7452004	0.82[CHB][hapmap];1.00[AMR][1000 genomes]
rs809320	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150546600-150553000	Enhancers	Fetal Brain Male	brain
2	chr6:150548200-150551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:150548800-150553000	Enhancers	Fetal Heart	heart
4	chr6:150549800-150554000	Weak transcription	Psoas Muscle	Psoas
5	chr6:150549800-150556400	Weak transcription	Left Ventricle	heart
6	chr6:150550000-150556600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:150550000-150558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:150550400-150551800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:150550600-150551600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:150550600-150551600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:150550600-150551600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:150550600-150551800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:150550600-150552200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:150550600-150552400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:150550600-150553000	Enhancers	NH-A	brain
16	chr6:150550600-150553200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:150550800-150551400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
18	chr6:150550800-150551400	Flanking Active TSS	Osteobl	bone
19	chr6:150550800-150551600	Enhancers	Fetal Brain Female	brain
20	chr6:150550800-150552200	Enhancers	NHEK	skin
21	chr6:150550800-150552600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:150550800-150552600	Enhancers	K562	blood
23	chr6:150550800-150552800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:150550800-150553800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:150550800-150554800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:150550800-150555400	Enhancers	HMEC	breast
27	chr6:150551000-150551600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:150551000-150551600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
29	chr6:150551000-150552200	Enhancers	HSMMtube	muscle
30	chr6:150551000-150552400	Enhancers	Right Atrium	heart
31	chr6:150551000-150552600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr6:150551000-150552600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr6:150551000-150552600	Enhancers	Placenta Amnion	Placenta Amnion
34	chr6:150551000-150552600	Enhancers	NHDF-Ad	bronchial
35	chr6:150551000-150552800	Enhancers	HSMM	muscle
36	chr6:150551000-150555000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:150551200-150551400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
38	chr6:150551200-150551400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
39	chr6:150551200-150551400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
40	chr6:150551200-150551400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
41	chr6:150551200-150552400	Enhancers	Right Ventricle	heart
42	chr6:150551200-150552400	Weak transcription	NHLF	lung
43	chr6:150551200-150552600	Enhancers	Fetal Muscle Leg	muscle
44	chr6:150551200-150553400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr6:150551200-150558800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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