Variant report

Variant	rs12528176
Chromosome Location	chr6:165519050-165519051
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12525469	0.91[EUR][1000 genomes]
rs59038875	1.00[AFR][1000 genomes]
rs73026708	1.00[EUR][1000 genomes]
rs73026746	1.00[EUR][1000 genomes]
rs73028837	0.91[EUR][1000 genomes]
rs73031121	0.91[EUR][1000 genomes]
rs73031125	0.91[EUR][1000 genomes]
rs73031145	0.91[EUR][1000 genomes]
rs73031150	0.91[EUR][1000 genomes]
rs73031151	0.91[EUR][1000 genomes]
rs73031153	0.82[EUR][1000 genomes]
rs73031156	0.91[EUR][1000 genomes]
rs73031159	0.82[EUR][1000 genomes]
rs73031167	0.82[EUR][1000 genomes]
rs73031172	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165515200-165520600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:165516400-165519400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:165516400-165530800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:165518800-165519600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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