Variant report

Variant	rs12528273
Chromosome Location	chr6:36802843-36802844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36770535..36772762-chr6:36802560..36804403,2	MCF-7	breast:
2	chr6:36799434..36803274-chr6:36828928..36832166,3	MCF-7	breast:
3	chr6:36802135..36806247-chr6:36814930..36817365,4	K562	blood:
4	chr6:36802126..36804560-chr6:36806714..36809729,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2116447	0.81[JPT][hapmap]
rs236357	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs236358	0.85[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs236377	0.80[CEU][hapmap]
rs236385	0.81[JPT][hapmap]
rs236386	0.81[JPT][hapmap]
rs3778017	0.81[JPT][hapmap]
rs460539	0.90[JPT][hapmap]
rs4714018	0.81[JPT][hapmap]
rs6934844	0.81[JPT][hapmap]
rs9366917	0.81[JPT][hapmap]
rs9380616	0.81[JPT][hapmap]
rs9380618	0.81[JPT][hapmap]
rs9394384	0.91[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9470426	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5262	chr6:36799329-36826210	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36791200-36805800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:36798600-36805400	Weak transcription	Right Ventricle	heart
3	chr6:36798600-36805400	Weak transcription	HUVEC	blood vessel
4	chr6:36798600-36806800	Weak transcription	Ovary	ovary
5	chr6:36798800-36804000	Weak transcription	Brain Anterior Caudate	brain
6	chr6:36798800-36805600	Weak transcription	Right Atrium	heart
7	chr6:36801000-36805000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr6:36801600-36804600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:36802200-36803000	Enhancers	Placenta	Placenta
10	chr6:36802200-36803200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
11	chr6:36802200-36803200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:36802200-36803200	Enhancers	Fetal Brain Female	brain
13	chr6:36802200-36803200	Enhancers	Spleen	Spleen
14	chr6:36802200-36803200	Enhancers	HSMMtube	muscle
15	chr6:36802200-36804600	Enhancers	Fetal Muscle Leg	muscle
16	chr6:36802200-36804800	Enhancers	Fetal Thymus	thymus
17	chr6:36802200-36806400	Enhancers	Fetal Heart	heart
18	chr6:36802400-36803000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:36802400-36803000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:36802400-36803000	Enhancers	Brain Germinal Matrix	brain
21	chr6:36802400-36803000	Enhancers	Brain Hippocampus Middle	brain
22	chr6:36802400-36803200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:36802400-36803200	Enhancers	Fetal Brain Male	brain
24	chr6:36802400-36803200	Enhancers	Fetal Kidney	kidney
25	chr6:36802400-36803200	Flanking Active TSS	HepG2	liver
26	chr6:36802400-36803200	Enhancers	K562	blood
27	chr6:36802400-36804000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr6:36802600-36803000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:36802600-36803000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:36802600-36803000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr6:36802600-36803000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:36802600-36803000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:36802600-36803000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
34	chr6:36802600-36803000	Enhancers	Brain Substantia Nigra	brain
35	chr6:36802600-36803200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
36	chr6:36802600-36803200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr6:36802600-36803200	Bivalent Enhancer	Fetal Stomach	stomach
38	chr6:36802600-36803400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
39	chr6:36802600-36804000	Weak transcription	Thymus	Thymus
40	chr6:36802800-36803000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
41	chr6:36802800-36803000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:36802800-36803000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:36802800-36803000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
44	chr6:36802800-36803000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
45	chr6:36802800-36803000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:36802800-36803000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:36802800-36803000	Enhancers	Left Ventricle	heart
48	chr6:36802800-36803000	Enhancers	Placenta Amnion	Placenta Amnion
49	chr6:36802800-36803200	Enhancers	H9 Cell Line	embryonic stem cell
50	chr6:36802800-36803200	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived

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