Variant report

Variant	rs12528913
Chromosome Location	chr6:36622549-36622550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36610331..36612483-chr6:36620560..36622921,2	MCF-7	breast:
2	chr6:36621309..36623042-chr6:36633695..36636161,2	K562	blood:
3	chr6:36615853..36625488-chr6:36645022..36649146,15	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10456441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10456442	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10456443	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10947616	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12203953	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12206430	0.97[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs12210094	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12524435	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12530170	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3829963	0.83[ASN][1000 genomes]
rs4464789	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4713993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457932	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6457934	0.85[ASN][1000 genomes]
rs6915170	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6920453	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6931097	0.85[ASN][1000 genomes]
rs72853320	0.88[ASN][1000 genomes]
rs7382183	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349002	0.97[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9349003	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9349005	0.85[ASN][1000 genomes]
rs9366912	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9394371	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36611600-36628600	Weak transcription	Right Atrium	heart
2	chr6:36613400-36625000	Weak transcription	Fetal Kidney	kidney
3	chr6:36618200-36624600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:36618200-36627400	Weak transcription	Left Ventricle	heart
5	chr6:36618800-36622800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:36619200-36625600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:36619400-36622800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:36619400-36628400	Weak transcription	Adipose Nuclei	Adipose
9	chr6:36620000-36622800	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:36620200-36628000	Weak transcription	Colonic Mucosa	Colon
11	chr6:36620200-36628600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:36620400-36623200	Weak transcription	Primary B cells from cord blood	blood
13	chr6:36620400-36626200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:36621600-36622600	Weak transcription	Fetal Intestine Large	intestine
15	chr6:36621600-36622600	Weak transcription	Fetal Intestine Small	intestine
16	chr6:36621600-36624400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:36621800-36626000	Enhancers	Thymus	Thymus
18	chr6:36622000-36626200	Enhancers	Fetal Thymus	thymus
19	chr6:36622200-36628600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:36622400-36624200	Enhancers	Placenta	Placenta
21	chr6:36622400-36628800	Enhancers	GM12878-XiMat	blood

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