Variant report

Variant	rs12529221
Chromosome Location	chr3:155340203-155340204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12525447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12526465	0.84[AMR][1000 genomes]
rs12526589	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41269878	0.84[AMR][1000 genomes]
rs41272050	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41272110	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73784287	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7450719	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7454656	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7759633	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822300	chr3:155338203-155344148	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv822301	chr3:155338203-155344202	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155336800-155346200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:155338400-155347000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:155338600-155346400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:155338600-155347000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:155340000-155340800	Enhancers	Liver	Liver
6	chr3:155340000-155340800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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