Variant report

Variant	rs12529636
Chromosome Location	chr6:132259721-132259722
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132259484-132267655..6:132269655-132282174	Hela-S3	cervix:
2	chr6:132258935..132261869-chr6:132262949..132265816,2	MCF-7	breast:
3	6:132182612-132191683..6:132259484-132267655	H1-hESC	embryonic stem cell:	embryo
4	chr6:132256025..132258679-chr6:132259156..132260837,2	K562	blood:
5	6:132176847-132180372..6:132259484-132267655	GM12878	blood:
6	chr6:132258659..132260854-chr6:132273707..132276413,2	MCF-7	breast:
7	chr6:132257318..132261081-chr6:132269716..132272401,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118523	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62424528	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72499773	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132258400-132259800	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr6:132258400-132260200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:132258400-132260200	Enhancers	NH-A	brain
4	chr6:132258400-132260600	Enhancers	HSMM	muscle
5	chr6:132258600-132259800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:132258600-132260000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr6:132258600-132260200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:132258800-132260200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:132259000-132260000	Flanking Active TSS	A549	lung
10	chr6:132259200-132271000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:132259400-132259800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:132259400-132260400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:132259400-132260800	Enhancers	HepG2	liver
14	chr6:132259400-132260800	Enhancers	NHDF-Ad	bronchial
15	chr6:132259400-132269800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:132259400-132270400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:132259400-132271000	Weak transcription	Liver	Liver
18	chr6:132259600-132260000	Weak transcription	NHLF	lung
19	chr6:132259600-132260200	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:132259600-132260400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:132259600-132260600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:132259600-132260600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:132259600-132260600	Enhancers	Osteobl	bone
24	chr6:132259600-132265400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:132259600-132265800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr6:132259600-132267600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:132259600-132268800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr6:132259600-132269400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:132259600-132269400	Weak transcription	HMEC	breast
30	chr6:132259600-132270000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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