Variant report

Variant	rs12529844
Chromosome Location	chr6:37550530-37550531
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37550216..37553079-chr6:37579897..37582643,2	MCF-7	breast:
2	chr6:37549451..37550961-chr6:37553159..37556146,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11752518	0.85[EUR][1000 genomes]
rs11752560	0.85[EUR][1000 genomes]
rs11754348	0.85[EUR][1000 genomes]
rs35416456	0.85[EUR][1000 genomes]
rs35799995	1.00[ASN][1000 genomes]
rs6925210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752124	chr6:37416219-37680622	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37534200-37556600	Weak transcription	Right Atrium	heart
2	chr6:37548800-37552400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:37549800-37550800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:37549800-37550800	Enhancers	HSMMtube	muscle
5	chr6:37550000-37550800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:37550000-37551000	Enhancers	HSMM	muscle
7	chr6:37550000-37552200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:37550000-37552400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:37550000-37553600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:37550000-37555600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:37550200-37552000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:37550200-37552200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:37550200-37552400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:37550200-37553200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:37550200-37555400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:37550200-37556000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:37550400-37550600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:37550400-37552000	Enhancers	Primary B cells from peripheral blood	blood
19	chr6:37550400-37552200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:37550400-37556400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links