Variant report

Variant	rs12531210
Chromosome Location	chr7:105471144-105471145
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105469427..105472941-chr7:105514673..105518034,4	MCF-7	breast:
2	chr7:105470129..105472971-chr7:105479942..105482901,2	MCF-7	breast:
3	chr7:105465600..105467491-chr7:105469764..105471785,2	K562	blood:

Variant related genes	Relation type
ENSG00000146776	Chromatin interaction
ENSG00000128536	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10245474	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12535473	0.82[EUR][1000 genomes]
rs2158897	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190450	0.92[EUR][1000 genomes]
rs2392708	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4292623	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs4727629	0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs56994060	0.81[ASN][1000 genomes]
rs58244737	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6953952	0.83[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6967440	0.92[EUR][1000 genomes]
rs740306	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs7783594	0.92[EUR][1000 genomes]
rs7786721	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105430200-105479200	Weak transcription	Aorta	Aorta
2	chr7:105446400-105471200	Weak transcription	Lung	lung
3	chr7:105446800-105471200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:105449000-105479200	Weak transcription	Esophagus	oesophagus
5	chr7:105452400-105471200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:105452600-105471200	Weak transcription	Right Ventricle	heart
7	chr7:105457200-105478000	Weak transcription	Brain Anterior Caudate	brain
8	chr7:105459200-105473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr7:105461000-105471200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:105461600-105473200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:105462600-105471400	Weak transcription	Primary T cells from cord blood	blood
12	chr7:105462800-105473000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:105464200-105473200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr7:105465400-105506600	Weak transcription	Fetal Intestine Large	intestine
15	chr7:105465800-105471200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr7:105465800-105473200	Enhancers	NHDF-Ad	bronchial
17	chr7:105466200-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:105466400-105472200	Enhancers	HepG2	liver
19	chr7:105468200-105478200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr7:105468400-105473600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr7:105468400-105478800	Weak transcription	Fetal Intestine Small	intestine
22	chr7:105468600-105471800	Enhancers	Pancreas	Pancrea
23	chr7:105468600-105473000	Enhancers	Fetal Lung	lung
24	chr7:105469000-105479200	Weak transcription	Right Atrium	heart
25	chr7:105469400-105471800	Enhancers	Stomach Mucosa	stomach
26	chr7:105469600-105472600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:105469800-105471400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr7:105469800-105472400	Enhancers	Osteobl	bone
29	chr7:105469800-105472600	Enhancers	Fetal Stomach	stomach
30	chr7:105469800-105472600	Enhancers	Rectal Smooth Muscle	rectum
31	chr7:105469800-105473800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr7:105470000-105471200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr7:105470000-105471200	Enhancers	NH-A	brain
34	chr7:105470000-105471400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr7:105470000-105471600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr7:105470000-105471800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr7:105470000-105471800	Enhancers	Ovary	ovary
38	chr7:105470000-105472000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr7:105470000-105472000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr7:105470000-105472200	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr7:105470000-105472600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr7:105470000-105472600	Enhancers	Fetal Heart	heart
43	chr7:105470000-105472600	Enhancers	HSMM	muscle
44	chr7:105470000-105473200	Enhancers	HUVEC	blood vessel
45	chr7:105470000-105473400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr7:105470000-105473600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr7:105470000-105473800	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr7:105470200-105471600	Enhancers	Gastric	stomach
49	chr7:105470200-105471800	Enhancers	H1 Cell Line	embryonic stem cell
50	chr7:105470200-105471800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links