Variant report

Variant	rs12531908
Chromosome Location	chr7:18838616-18838617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10266741	0.81[JPT][hapmap]
rs10280633	0.81[JPT][hapmap]
rs12533274	0.85[JPT][hapmap]
rs12540265	0.81[JPT][hapmap]
rs12699981	0.81[JPT][hapmap]
rs2028012	0.80[JPT][hapmap]
rs2028016	0.81[JPT][hapmap]
rs2073962	0.81[JPT][hapmap]
rs2078866	0.81[JPT][hapmap]
rs2157901	0.81[JPT][hapmap]
rs2520345	0.81[JPT][hapmap]
rs2520360	0.81[JPT][hapmap]
rs2588597	0.81[JPT][hapmap]
rs2588599	0.81[JPT][hapmap]
rs2588600	0.81[JPT][hapmap]
rs2588604	0.81[JPT][hapmap]
rs2588605	0.81[JPT][hapmap]
rs2588623	0.81[JPT][hapmap]
rs2588625	0.81[JPT][hapmap]
rs2588627	0.81[JPT][hapmap]
rs6951973	0.81[JPT][hapmap]
rs6963568	0.81[JPT][hapmap]
rs6972607	0.81[JPT][hapmap]
rs7779024	0.81[JPT][hapmap]
rs7798677	0.86[JPT][hapmap]
rs929196	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12531908	SP8	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18834200-18845200	Weak transcription	Aorta	Aorta
2	chr7:18837800-18838800	Enhancers	NH-A	brain
3	chr7:18838000-18838800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:18838400-18839000	Enhancers	Osteobl	bone
5	chr7:18838400-18843400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:18838600-18845600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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