Variant report
| Variant | rs12532047 |
|---|---|
| Chromosome Location | chr7:80312062-80312063 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1049673 | 0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12534038 | 0.81[EUR][1000 genomes] |
| rs12706949 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs12706950 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13223096 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13230419 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs13246513 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1405747 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17266080 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3173802 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs3173803 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3173805 | 0.80[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3211928 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3211931 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3211932 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3211952 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs3211958 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3211960 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62639089 | 0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs66768935 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7755 | 0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888524 | chr7:80107798-80723062 | Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 2 | nsv831043 | chr7:80119414-80322092 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv888526 | chr7:80240943-80354229 | Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 4 | esv3406929 | chr7:80311216-80314139 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:80296400-80315800 | Weak transcription | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 2 | chr7:80310600-80315600 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
