Variant report

Variant	rs12532653
Chromosome Location	chr7:13079449-13079450
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:13075551..13079292-chr7:13079438..13082222,3	MCF-7	breast:
2	chr7:13073844..13077731-chr7:13078822..13083075,4	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10488243	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10950428	0.82[ASN][1000 genomes]
rs11975327	0.87[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12112648	0.85[ASN][1000 genomes]
rs12113090	0.86[JPT][hapmap]
rs12530565	0.82[ASN][1000 genomes]
rs12530643	0.81[ASN][1000 genomes]
rs12530651	0.81[ASN][1000 genomes]
rs12531362	0.82[JPT][hapmap]
rs12531363	0.87[JPT][hapmap]
rs12534537	0.82[ASN][1000 genomes]
rs12537712	0.90[ASN][1000 genomes]
rs12671480	0.85[ASN][1000 genomes]
rs12672647	0.89[ASN][1000 genomes]
rs17166605	0.86[ASN][1000 genomes]
rs17166608	0.90[ASN][1000 genomes]
rs17166610	0.90[ASN][1000 genomes]
rs17166612	0.89[ASN][1000 genomes]
rs17166614	0.90[ASN][1000 genomes]
rs17166626	0.91[ASN][1000 genomes]
rs17166643	0.89[ASN][1000 genomes]
rs17166651	0.92[ASN][1000 genomes]
rs17166671	0.91[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs17166673	0.92[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs17166756	0.87[JPT][hapmap]
rs1981639	0.87[JPT][hapmap]
rs2110650	0.81[ASN][1000 genomes]
rs34125302	0.90[ASN][1000 genomes]
rs4236278	0.87[JPT][hapmap]
rs4636097	0.85[ASN][1000 genomes]
rs4719347	0.90[ASN][1000 genomes]
rs4721177	0.90[ASN][1000 genomes]
rs55957561	0.90[ASN][1000 genomes]
rs57459966	0.83[ASN][1000 genomes]
rs59675898	0.83[ASN][1000 genomes]
rs60020188	0.81[ASN][1000 genomes]
rs60345281	0.87[ASN][1000 genomes]
rs60705466	0.88[ASN][1000 genomes]
rs61232028	0.87[ASN][1000 genomes]
rs61639094	0.81[ASN][1000 genomes]
rs6461007	0.87[JPT][hapmap]
rs6950438	0.90[ASN][1000 genomes]
rs6950752	0.90[ASN][1000 genomes]
rs6956549	0.90[ASN][1000 genomes]
rs6958548	0.83[ASN][1000 genomes]
rs6964875	0.90[JPT][hapmap]
rs6974627	0.87[JPT][hapmap]
rs6977552	0.92[ASN][1000 genomes]
rs73259988	0.81[ASN][1000 genomes]
rs73261908	0.87[ASN][1000 genomes]
rs73261911	0.88[ASN][1000 genomes]
rs73261913	0.87[ASN][1000 genomes]
rs73261923	0.88[ASN][1000 genomes]
rs73261936	0.89[ASN][1000 genomes]
rs73261954	0.89[ASN][1000 genomes]
rs73261964	0.89[ASN][1000 genomes]
rs738052	0.87[ASN][1000 genomes]
rs763534	0.81[ASN][1000 genomes]
rs7777911	0.82[ASN][1000 genomes]
rs7778632	0.82[ASN][1000 genomes]
rs7787998	0.90[ASN][1000 genomes]
rs7788484	0.87[JPT][hapmap]
rs7789970	0.87[JPT][hapmap]
rs7790328	0.87[JPT][hapmap]
rs7790665	0.87[JPT][hapmap]
rs7790770	0.87[JPT][hapmap]
rs7797104	0.82[ASN][1000 genomes]
rs9639142	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1029771	chr7:12927648-13153855	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv538736	chr7:12927648-13153855	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1026624	chr7:12963907-13123408	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13072000-13082200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:13072400-13080600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:13074600-13082600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:13076600-13084200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr7:13079400-13082400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:13079400-13085400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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