Variant report

Variant	rs12533577
Chromosome Location	chr7:121977774-121977775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12536618	0.95[AFR][1000 genomes]
rs12540444	0.84[AFR][1000 genomes]
rs17462032	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5931	chr7:121944137-121988594	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121957400-121990800	Weak transcription	Pancreas	Pancrea
2	chr7:121957400-122051200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:121958800-121994400	Weak transcription	Lung	lung
4	chr7:121961200-121980400	Weak transcription	Left Ventricle	heart
5	chr7:121962600-121993000	Weak transcription	Ovary	ovary
6	chr7:121974400-121987200	Weak transcription	Fetal Intestine Large	intestine
7	chr7:121975800-121978200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:121975800-121978200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:121976200-121978200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr7:121976400-121977800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr7:121976400-121978000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr7:121976400-121978200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr7:121976600-121977800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:121976800-121978000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:121977000-121978200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:121977200-121978200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:121977200-121979200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:121977400-121978200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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