Variant report

Variant	rs12534417
Chromosome Location	chr7:38607968-38607969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10269719	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10278207	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12154721	0.85[ASN][1000 genomes]
rs12536104	0.85[ASN][1000 genomes]
rs12536957	0.85[ASN][1000 genomes]
rs12539651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12701637	0.85[ASN][1000 genomes]
rs12701638	0.85[ASN][1000 genomes]
rs13242776	0.91[ASN][1000 genomes]
rs2116667	0.82[ASN][1000 genomes]
rs28564242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28815597	0.89[ASN][1000 genomes]
rs4723771	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62444236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946301	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6946369	0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7807645	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38596800-38608200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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