Variant report

Variant	rs12536231
Chromosome Location	chr7:139972494-139972495
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139136536..139138784-chr7:139972292..139974609,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12703676	0.82[ASN][1000 genomes]
rs13225929	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13227697	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2429205	0.91[ASN][1000 genomes]
rs2429206	0.96[ASN][1000 genomes]
rs2429207	0.96[ASN][1000 genomes]
rs2429209	0.96[ASN][1000 genomes]
rs2471304	0.93[ASN][1000 genomes]
rs2471305	0.96[ASN][1000 genomes]
rs2471306	0.95[ASN][1000 genomes]
rs2471307	0.96[ASN][1000 genomes]
rs2471308	0.91[ASN][1000 genomes]
rs2471309	0.96[ASN][1000 genomes]
rs2471310	0.87[ASN][1000 genomes]
rs2471311	0.96[ASN][1000 genomes]
rs2471312	0.96[ASN][1000 genomes]
rs2471313	0.96[ASN][1000 genomes]
rs7785786	0.91[ASN][1000 genomes]
rs7800363	0.96[ASN][1000 genomes]
rs7809787	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	esv2761371	chr7:139964350-139979655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv520097	chr7:139969051-139979843	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv519667	chr7:139969051-139992387	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139960400-139975200	Weak transcription	Right Atrium	heart
2	chr7:139965400-139973400	Weak transcription	HepG2	liver
3	chr7:139969400-139974800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:139971400-139973200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:139972400-139975000	Weak transcription	Fetal Intestine Small	intestine

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