Variant report

Variant	rs12536242
Chromosome Location	chr7:70986504-70986505
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12671327	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56670487	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1033783	chr7:70955277-71023877	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70973200-70998600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:70980400-70986600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:70981000-70986600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:70983000-70992800	Weak transcription	Ovary	ovary
5	chr7:70983000-71007800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:70983200-70987800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:70985600-70987400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:70985600-70988000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr7:70985600-70988000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:70985800-70987400	Enhancers	Fetal Muscle Leg	muscle
11	chr7:70985800-70987400	Enhancers	NHDF-Ad	bronchial
12	chr7:70985800-70988200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:70986000-70986600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:70986000-70986800	Enhancers	Fetal Muscle Trunk	muscle
15	chr7:70986000-70987200	Enhancers	HSMMtube	muscle
16	chr7:70986000-70987600	Strong transcription	H9 Cell Line	embryonic stem cell
17	chr7:70986200-70986600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr7:70986200-70986600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:70986200-70986600	Enhancers	Esophagus	oesophagus
20	chr7:70986200-70986800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:70986200-70986800	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr7:70986200-70987000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:70986200-70987200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr7:70986200-70987200	Enhancers	HSMM	muscle
25	chr7:70986400-70986600	Enhancers	Fetal Lung	lung
26	chr7:70986400-70986800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr7:70986400-70988000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
28	chr7:70986400-70992600	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links