Variant report

Variant	rs12537107
Chromosome Location	chr1:105132850-105132851
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:105128438..105130994-chr1:105132786..105134781,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10226448	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10226787	0.81[EUR][1000 genomes]
rs10242012	0.84[EUR][1000 genomes]
rs10243275	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10245082	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10245287	0.84[EUR][1000 genomes]
rs10248922	0.81[EUR][1000 genomes]
rs10249779	0.84[EUR][1000 genomes]
rs10250128	0.84[EUR][1000 genomes]
rs10252481	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10258669	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10265569	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10271196	0.84[EUR][1000 genomes]
rs10272491	0.81[EUR][1000 genomes]
rs10277995	0.83[EUR][1000 genomes]
rs10281472	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10281833	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1159874	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12530927	0.81[EUR][1000 genomes]
rs12539212	0.81[EUR][1000 genomes]
rs12539911	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12672567	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13228331	0.81[EUR][1000 genomes]
rs13228500	0.84[EUR][1000 genomes]
rs13228531	0.81[EUR][1000 genomes]
rs13241328	0.84[EUR][1000 genomes]
rs2214319	0.81[EUR][1000 genomes]
rs2214320	0.81[EUR][1000 genomes]
rs2390199	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28852390	0.82[EUR][1000 genomes]
rs36157620	0.81[EUR][1000 genomes]
rs4141353	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4994101	0.84[EUR][1000 genomes]
rs4994102	0.84[EUR][1000 genomes]
rs58159256	0.81[EUR][1000 genomes]
rs73267155	0.84[EUR][1000 genomes]
rs7780131	0.81[EUR][1000 genomes]
rs7796408	0.81[EUR][1000 genomes]
rs9654951	0.81[EUR][1000 genomes]
rs9654952	0.81[EUR][1000 genomes]
rs9654953	0.81[EUR][1000 genomes]
rs9655183	0.81[EUR][1000 genomes]
rs9655184	0.81[EUR][1000 genomes]
rs9655185	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010903	chr1:104483363-105468941	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2762170	chr1:104817700-105411596	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv872081	chr1:105009637-105455991	Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1004836	chr1:105104358-105173095	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv999490	chr1:105105338-105173095	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1013052	chr1:105105338-105175991	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv547218	chr1:105111443-105134662	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:105127800-105134800	Weak transcription	Primary B cells from peripheral blood	blood

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