Variant report

Variant	rs12537577
Chromosome Location	chr7:27496897-27496898
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12537579	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12540319	0.85[AMR][1000 genomes]
rs17155208	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27494200-27497000	Weak transcription	Osteobl	bone
2	chr7:27494200-27498400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:27494200-27498400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:27494200-27498400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:27494200-27498400	Weak transcription	NHLF	lung
6	chr7:27494200-27498600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:27494400-27498600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:27494400-27498600	Weak transcription	NHDF-Ad	bronchial
9	chr7:27494600-27497000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:27496600-27497000	Enhancers	Fetal Stomach	stomach
11	chr7:27496600-27497200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr7:27496600-27497400	Active TSS	Brain Substantia Nigra	brain
13	chr7:27496800-27497400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr7:27496800-27497400	Active TSS	Brain Hippocampus Middle	brain
15	chr7:27496800-27497400	Active TSS	NH-A	brain
16	chr7:27496800-27497600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr7:27496800-27497800	Active TSS	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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