Variant report

Variant	rs12539558
Chromosome Location	chr7:78090169-78090170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10270420	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[ASN][1000 genomes]
rs10282460	0.91[ASN][1000 genomes]
rs12536872	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150825	1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17150832	0.81[CEU][hapmap];0.86[EUR][1000 genomes]
rs2160322	0.87[YRI][hapmap]
rs6972511	0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[ASN][1000 genomes]
rs73150309	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7781102	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7789944	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7795760	1.00[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.88[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808257	0.89[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9649305	0.90[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78089200-78092400	Weak transcription	Brain Substantia Nigra	brain
2	chr7:78089600-78093000	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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