Variant report

Variant	rs12539715
Chromosome Location	chr7:18830320-18830321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1011446	0.83[ASN][1000 genomes]
rs10266741	0.90[ASN][1000 genomes]
rs10280633	0.87[ASN][1000 genomes]
rs10950703	0.90[ASN][1000 genomes]
rs12540265	0.93[ASN][1000 genomes]
rs12699981	0.87[ASN][1000 genomes]
rs2028012	0.87[ASN][1000 genomes]
rs2028013	0.87[ASN][1000 genomes]
rs2028014	0.87[ASN][1000 genomes]
rs2028016	0.90[ASN][1000 genomes]
rs2073962	0.90[ASN][1000 genomes]
rs2078866	0.90[ASN][1000 genomes]
rs2078868	0.89[ASN][1000 genomes]
rs2157901	0.86[ASN][1000 genomes]
rs2257696	0.86[ASN][1000 genomes]
rs2519742	0.87[ASN][1000 genomes]
rs2519744	0.87[ASN][1000 genomes]
rs2519745	0.87[ASN][1000 genomes]
rs2520345	0.87[ASN][1000 genomes]
rs2520360	0.86[ASN][1000 genomes]
rs2588595	0.87[ASN][1000 genomes]
rs2588596	0.87[ASN][1000 genomes]
rs2588599	0.87[ASN][1000 genomes]
rs2588600	0.87[ASN][1000 genomes]
rs2588601	0.87[ASN][1000 genomes]
rs2588602	0.87[ASN][1000 genomes]
rs2588603	0.87[ASN][1000 genomes]
rs2588604	0.87[ASN][1000 genomes]
rs2588605	0.87[ASN][1000 genomes]
rs2588623	0.87[ASN][1000 genomes]
rs2588625	0.92[ASN][1000 genomes]
rs2588627	0.91[ASN][1000 genomes]
rs3844320	0.86[ASN][1000 genomes]
rs3852250	0.89[ASN][1000 genomes]
rs3854290	0.89[ASN][1000 genomes]
rs3855596	0.90[ASN][1000 genomes]
rs4721725	0.83[ASN][1000 genomes]
rs62446605	0.83[ASN][1000 genomes]
rs62446608	0.86[ASN][1000 genomes]
rs6951973	0.87[ASN][1000 genomes]
rs6972607	0.90[ASN][1000 genomes]
rs7779024	0.87[ASN][1000 genomes]
rs7779555	0.87[ASN][1000 genomes]
rs7782894	0.90[ASN][1000 genomes]
rs7783209	0.89[ASN][1000 genomes]
rs7785216	0.87[ASN][1000 genomes]
rs7798677	0.87[ASN][1000 genomes]
rs7801849	0.90[ASN][1000 genomes]
rs929196	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18790600-18835000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18818600-18832200	Weak transcription	Osteobl	bone
3	chr7:18818800-18832400	Weak transcription	HSMMtube	muscle
4	chr7:18827800-18832400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:18828000-18832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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