Variant report

Variant	rs12541060
Chromosome Location	chr8:38816403-38816404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:38809690..38812005-chr8:38814364..38816596,2	K562	blood:
2	chr8:38808571..38813018-chr8:38815096..38820792,6	K562	blood:
3	chr8:38815665..38817744-chr8:38826216..38828410,2	K562	blood:
4	chr8:38814756..38818427-chr8:38822560..38824207,3	K562	blood:

Variant related genes	Relation type
ENSG00000169499	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11775189	0.83[AFR][1000 genomes]
rs34124032	0.87[AFR][1000 genomes]
rs4489297	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4733957	0.83[AFR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs12541060	ADAM32	cis	Nerve Tibial	GTEx
rs12541060	PLEKHA2	Cis_1M	lymphoblastoid	RTeQTL
rs12541060	ADAM32	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:38795800-38830600	Weak transcription	Fetal Kidney	kidney
2	chr8:38797000-38831200	Weak transcription	Psoas Muscle	Psoas
3	chr8:38798800-38820600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:38799000-38820800	Strong transcription	Stomach Smooth Muscle	stomach
5	chr8:38799000-38822000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr8:38799600-38821200	Strong transcription	Hela-S3	cervix
7	chr8:38800000-38820000	Strong transcription	Fetal Stomach	stomach
8	chr8:38800400-38822800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr8:38801600-38819200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:38801600-38819600	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:38801800-38818200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr8:38802000-38817800	Strong transcription	Primary T cells from cord blood	blood
13	chr8:38802600-38817000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr8:38802600-38819600	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr8:38802800-38818200	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr8:38802800-38831000	Weak transcription	K562	blood
17	chr8:38805600-38818800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:38806000-38817600	Strong transcription	Thymus	Thymus
19	chr8:38806200-38820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:38806600-38820200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:38806800-38817200	Strong transcription	Liver	Liver
22	chr8:38807000-38820200	Strong transcription	Fetal Lung	lung
23	chr8:38807200-38817400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr8:38807200-38818800	Strong transcription	Dnd41	blood
25	chr8:38807600-38818000	Strong transcription	Fetal Intestine Large	intestine
26	chr8:38807800-38817400	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:38807800-38820000	Strong transcription	Fetal Intestine Small	intestine
28	chr8:38808000-38818800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr8:38808200-38817000	Strong transcription	Esophagus	oesophagus
30	chr8:38808200-38817800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr8:38808200-38819600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr8:38808400-38817600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr8:38809000-38818600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr8:38809000-38820200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:38809400-38820600	Strong transcription	Placenta Amnion	Placenta Amnion
36	chr8:38809600-38817200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr8:38809600-38820000	Strong transcription	HMEC	breast
38	chr8:38810000-38817600	Strong transcription	NHEK	skin
39	chr8:38810200-38831000	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr8:38811800-38819800	Weak transcription	Fetal Heart	heart
41	chr8:38811800-38823800	Weak transcription	Fetal Brain Male	brain
42	chr8:38812000-38817400	Weak transcription	A549	lung
43	chr8:38813200-38817400	Weak transcription	NHDF-Ad	bronchial
44	chr8:38813200-38817600	Strong transcription	Colonic Mucosa	Colon
45	chr8:38814000-38826000	Weak transcription	Pancreas	Pancrea
46	chr8:38814600-38817600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr8:38814600-38818400	Strong transcription	Lung	lung
48	chr8:38814800-38823200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:38815000-38820600	Genic enhancers	Primary B cells from peripheral blood	blood
50	chr8:38815000-38823600	Weak transcription	Brain Angular Gyrus	brain

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