Variant report

Variant	rs12541701
Chromosome Location	chr8:39970836-39970837
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10113242	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682158	0.87[ASN][1000 genomes]
rs13257096	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008253	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv539555	chr8:39683857-40673606	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv534582	chr8:39884590-40653224	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:39959600-39976400	Weak transcription	Pancreas	Pancrea
2	chr8:39967200-39971800	Weak transcription	Ovary	ovary
3	chr8:39967400-39976400	Weak transcription	Stomach Mucosa	stomach
4	chr8:39969000-39972600	Enhancers	A549	lung
5	chr8:39969600-39972000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr8:39970200-39971000	Enhancers	Colon Smooth Muscle	Colon
7	chr8:39970400-39971000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr8:39970400-39971200	Enhancers	Stomach Smooth Muscle	stomach
9	chr8:39970800-39971000	Flanking Active TSS	Rectal Smooth Muscle	rectum
10	chr8:39970800-39971200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:39970800-39971400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:39970800-39972600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:39970800-39976400	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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