Variant report

Variant	rs12541897
Chromosome Location	chr8:114556364-114556365
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10089887	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10106248	0.89[ASN][1000 genomes]
rs11786058	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11985886	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12545155	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12678354	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1382467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs1398811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs1513515	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1513523	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1513524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2927865	0.81[EUR][1000 genomes]
rs2927868	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2927869	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2927870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes]
rs2927871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2927872	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes]
rs2927873	0.91[EUR][1000 genomes]
rs2927874	0.91[EUR][1000 genomes]
rs2942835	0.91[EUR][1000 genomes]
rs2942845	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2942848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2942851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs2942852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs2942853	0.81[EUR][1000 genomes]
rs2954880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2954881	0.81[EUR][1000 genomes]
rs2954894	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4311682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4354335	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4531082	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs4532621	0.80[EUR][1000 genomes]
rs4593574	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6469455	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6469457	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6981966	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7002354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7003686	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs72495802	0.93[ASN][1000 genomes]
rs7461932	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7829130	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7831822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7839252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7839352	0.81[EUR][1000 genomes]
rs9297493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs9643079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9649937	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817379	chr8:114338391-115011632	Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv831429	chr8:114438561-114595565	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891332	chr8:114532488-114667112	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv891333	chr8:114552521-114643852	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:114556200-114556600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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