Variant report
| Variant | rs12542259 |
|---|---|
| Chromosome Location | chr8:88789512-88789513 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10093305 | 0.90[ASN][1000 genomes] |
| rs10955371 | 0.81[ASN][1000 genomes] |
| rs11776728 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap] |
| rs11993831 | 0.81[ASN][1000 genomes] |
| rs12547416 | 0.86[ASN][1000 genomes] |
| rs12550416 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13258373 | 0.85[ASN][1000 genomes] |
| rs1507889 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs16872301 | 0.88[ASN][1000 genomes] |
| rs2097943 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs2337209 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4567089 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs4961070 | 0.83[EUR][1000 genomes] |
| rs55767621 | 0.81[AMR][1000 genomes] |
| rs56353979 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs58215382 | 0.90[ASN][1000 genomes] |
| rs72673131 | 0.87[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs72673132 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs763339 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs763340 | 0.81[EUR][1000 genomes] |
| rs7826072 | 0.88[ASN][1000 genomes] |
| rs7844015 | 0.88[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891167 | chr8:88600593-88846956 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv831384 | chr8:88746718-88917248 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv6291 | chr8:88767147-88802956 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:88788400-88790200 | Enhancers | HUVEC | blood vessel |
