Variant report

Variant	rs12542544
Chromosome Location	chr8:63112852-63112853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10957215	1.00[YRI][hapmap]
rs10957216	1.00[YRI][hapmap]
rs1601056	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34250977	0.85[ASN][1000 genomes]
rs4268118	0.86[ASN][1000 genomes]
rs4383956	0.86[ASN][1000 genomes]
rs4562310	0.85[ASN][1000 genomes]
rs4610738	0.85[ASN][1000 genomes]
rs4738938	0.86[ASN][1000 genomes]
rs7015635	0.85[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7832144	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016883	chr8:63110741-63171354	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63112600-63115000	Weak transcription	Brain Germinal Matrix	brain
2	chr8:63112800-63113600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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