Variant report

Variant	rs12544703
Chromosome Location	chr8:59310424-59310425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10957053	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1160133	0.86[ASN][1000 genomes]
rs12546225	0.86[ASN][1000 genomes]
rs897736	0.86[ASN][1000 genomes]
rs897737	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757275	chr8:59305290-59342331	Flanking Active TSS Active TSS Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
2	esv2759619	chr8:59305290-59342331	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv438058	chr8:59305833-59318448	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59308000-59310800	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:59308000-59311200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr8:59308200-59310600	Enhancers	Adipose Nuclei	Adipose
4	chr8:59308200-59310800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:59308600-59311400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr8:59308600-59312400	Weak transcription	Fetal Stomach	stomach
7	chr8:59309600-59312600	Weak transcription	Fetal Lung	lung
8	chr8:59309800-59312200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr8:59310000-59310600	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr8:59310200-59310600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:59310200-59310600	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr8:59310400-59311000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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