Variant report

Variant	rs12547078
Chromosome Location	chr8:50086802-50086803
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12541755	0.81[EUR][1000 genomes]
rs12542224	0.81[EUR][1000 genomes]
rs12542454	0.81[EUR][1000 genomes]
rs12544217	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12544867	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12545405	0.81[EUR][1000 genomes]
rs12547032	0.81[EUR][1000 genomes]
rs12549218	0.82[EUR][1000 genomes]
rs12549226	0.81[EUR][1000 genomes]
rs13253391	0.85[AMR][1000 genomes]
rs13267089	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13267457	0.81[EUR][1000 genomes]
rs13268457	0.81[EUR][1000 genomes]
rs13270612	0.83[EUR][1000 genomes]
rs13272842	0.85[AMR][1000 genomes]
rs13276713	0.81[EUR][1000 genomes]
rs34100718	0.81[EUR][1000 genomes]
rs34257797	0.81[EUR][1000 genomes]
rs34773335	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34806739	0.81[EUR][1000 genomes]
rs35136937	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35271168	0.81[EUR][1000 genomes]
rs35326477	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35689555	0.81[EUR][1000 genomes]
rs62508984	0.85[AMR][1000 genomes]
rs62508987	0.86[AMR][1000 genomes]
rs62508991	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50085200-50087000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:50086800-50087600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links