Variant report

Variant	rs12547379
Chromosome Location	chr8:103706359-103706360
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11778738	0.85[AMR][1000 genomes]
rs12542591	0.85[AMR][1000 genomes]
rs55635906	0.85[AMR][1000 genomes]
rs55719258	0.84[AMR][1000 genomes]
rs58473330	0.84[AMR][1000 genomes]
rs59808494	0.85[AMR][1000 genomes]
rs9642980	0.92[GIH][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv1026755	chr8:103676970-103728556	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1018625	chr8:103676970-103729197	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103679800-103706400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:103701400-103708200	Weak transcription	K562	blood
3	chr8:103705400-103706400	Weak transcription	NHDF-Ad	bronchial
4	chr8:103705400-103709600	Weak transcription	A549	lung
5	chr8:103705400-103714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:103705600-103710400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:103705600-103710600	Weak transcription	HSMMtube	muscle
8	chr8:103705800-103710400	Weak transcription	NHEK	skin
9	chr8:103706000-103706400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:103706000-103710400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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