Variant report

Variant	rs12548316
Chromosome Location	chr8:103965318-103965319
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1512351	1.00[YRI][hapmap]
rs1533182	1.00[YRI][hapmap]
rs17199777	1.00[YRI][hapmap]
rs17200931	1.00[YRI][hapmap]
rs3808549	1.00[YRI][hapmap]
rs3808551	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv891246	chr8:103928940-103967694	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv465752	chr8:103953990-103979714	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv611823	chr8:103953990-103979714	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103940200-103972600	Weak transcription	Ovary	ovary
2	chr8:103943800-103973600	Weak transcription	Fetal Kidney	kidney
3	chr8:103946800-103974000	Weak transcription	Brain Germinal Matrix	brain
4	chr8:103952600-103973600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:103952800-103971000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr8:103953000-103967200	Weak transcription	Brain Substantia Nigra	brain
7	chr8:103953000-103968800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr8:103953200-103972800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:103953200-103974000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:103953600-103973400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:103959000-103973400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr8:103961600-103971800	Weak transcription	Pancreas	Pancrea
13	chr8:103961600-103972400	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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