Variant report

Variant	rs12549479
Chromosome Location	chr8:5169490-5169491
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10100035	0.83[ASN][1000 genomes]
rs10100174	0.83[ASN][1000 genomes]
rs10100197	0.83[ASN][1000 genomes]
rs10104304	0.89[ASN][1000 genomes]
rs10107440	0.84[ASN][1000 genomes]
rs11136851	0.87[ASN][1000 genomes]
rs11780928	0.89[ASN][1000 genomes]
rs11782726	0.84[ASN][1000 genomes]
rs11782756	0.85[ASN][1000 genomes]
rs11783530	0.86[ASN][1000 genomes]
rs11787485	0.89[ASN][1000 genomes]
rs11989368	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996707	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12546222	0.83[ASN][1000 genomes]
rs12548405	0.84[ASN][1000 genomes]
rs12678557	0.82[ASN][1000 genomes]
rs12678576	0.80[ASN][1000 genomes]
rs12679623	0.87[ASN][1000 genomes]
rs12679657	0.87[ASN][1000 genomes]
rs12681537	0.86[ASN][1000 genomes]
rs12716627	0.83[ASN][1000 genomes]
rs12716628	0.83[ASN][1000 genomes]
rs12716630	0.80[ASN][1000 genomes]
rs12716631	0.82[ASN][1000 genomes]
rs13249114	0.87[ASN][1000 genomes]
rs13249604	0.89[ASN][1000 genomes]
rs13251656	0.89[ASN][1000 genomes]
rs13275405	0.85[ASN][1000 genomes]
rs13276499	0.85[ASN][1000 genomes]
rs1362681	0.83[ASN][1000 genomes]
rs1420835	0.82[ASN][1000 genomes]
rs1420836	0.82[ASN][1000 genomes]
rs1420837	0.82[ASN][1000 genomes]
rs1420838	0.83[ASN][1000 genomes]
rs1420839	0.84[ASN][1000 genomes]
rs1420840	0.84[ASN][1000 genomes]
rs1420841	0.84[ASN][1000 genomes]
rs2111420	0.87[ASN][1000 genomes]
rs2111421	0.87[ASN][1000 genomes]
rs2193429	0.89[ASN][1000 genomes]
rs2216312	0.89[ASN][1000 genomes]
rs2407956	0.86[ASN][1000 genomes]
rs2407957	0.85[ASN][1000 genomes]
rs2407958	0.87[ASN][1000 genomes]
rs2407960	0.87[ASN][1000 genomes]
rs4270986	0.87[ASN][1000 genomes]
rs4369005	0.86[ASN][1000 genomes]
rs4375025	0.87[ASN][1000 genomes]
rs4386997	0.85[ASN][1000 genomes]
rs4449817	0.86[ASN][1000 genomes]
rs4552921	0.86[ASN][1000 genomes]
rs4552922	0.86[ASN][1000 genomes]
rs4552923	0.87[ASN][1000 genomes]
rs4598272	0.87[ASN][1000 genomes]
rs4875492	0.87[ASN][1000 genomes]
rs4875493	0.87[ASN][1000 genomes]
rs4875494	0.87[ASN][1000 genomes]
rs62493298	0.89[ASN][1000 genomes]
rs62493299	0.89[ASN][1000 genomes]
rs6990899	0.84[ASN][1000 genomes]
rs6994845	0.84[ASN][1000 genomes]
rs6995158	0.83[ASN][1000 genomes]
rs7014631	0.82[ASN][1000 genomes]
rs7815253	0.83[ASN][1000 genomes]
rs7823730	0.87[ASN][1000 genomes]
rs888252	0.84[ASN][1000 genomes]
rs9657410	0.83[ASN][1000 genomes]
rs9657412	0.82[ASN][1000 genomes]
rs9657413	0.82[ASN][1000 genomes]
rs9657414	0.84[ASN][1000 genomes]
rs966354	0.87[ASN][1000 genomes]
rs966355	0.87[ASN][1000 genomes]
rs966356	0.87[ASN][1000 genomes]
rs985109	0.83[ASN][1000 genomes]
rs985110	0.82[ASN][1000 genomes]
rs985111	0.83[ASN][1000 genomes]
rs985112	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv889978	chr8:4853197-5460166	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv831217	chr8:5007449-5210093	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv609902	chr8:5088786-5533605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1031427	chr8:5129076-5603378	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv889985	chr8:5151457-5194048	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv1018219	chr8:5151611-5173873	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	nsv1031634	chr8:5151611-5234951	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1023633	chr8:5157363-5170509	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	nsv889986	chr8:5166336-5207530	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv519292	chr8:5168886-5172454	Enhancers	n/a	n/a	inside rSNPs	diseases
12	nsv889987	chr8:5169388-5185589	Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:5169200-5170000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr8:5169400-5169800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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