Variant report

Variant	rs12549629
Chromosome Location	chr8:9753573-9753574
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10104236	0.81[EUR][1000 genomes]
rs10108550	0.81[EUR][1000 genomes]
rs11987861	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12056944	0.88[EUR][1000 genomes]
rs12543685	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12543996	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12544019	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12545481	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12546952	0.85[EUR][1000 genomes]
rs12548011	0.86[EUR][1000 genomes]
rs13270146	0.87[EUR][1000 genomes]
rs17150693	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1962430	0.84[EUR][1000 genomes]
rs2055729	0.81[CEU][hapmap]
rs491364	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs506276	0.85[CEU][hapmap]
rs592420	0.95[CEU][hapmap];0.87[EUR][1000 genomes]
rs59880252	0.86[EUR][1000 genomes]
rs612689	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62489486	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62489489	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6601389	0.81[EUR][1000 genomes]
rs6601393	0.81[EUR][1000 genomes]
rs6981023	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6989793	0.88[EUR][1000 genomes]
rs6990268	0.81[EUR][1000 genomes]
rs6996932	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7828229	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9741400-9754000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:9741400-9754000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:9747400-9754000	Weak transcription	Brain Germinal Matrix	brain
4	chr8:9752600-9754200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:9753000-9753600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:9753000-9755600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:9753000-9757600	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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