Variant report

Variant	rs12551056
Chromosome Location	chr9:105351062-105351063
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10512299	0.90[CEU][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10820187	0.83[AMR][1000 genomes]
rs10990124	0.83[AMR][1000 genomes]
rs10990125	0.83[AMR][1000 genomes]
rs10990126	0.83[AMR][1000 genomes]
rs10990127	0.83[AMR][1000 genomes]
rs10990148	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10990158	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10990196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12380562	0.83[AMR][1000 genomes]
rs12553776	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12684181	0.89[CHB][hapmap];0.81[ASN][1000 genomes]
rs1332980	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1332981	0.89[CHB][hapmap];1.00[JPT][hapmap]
rs1412798	0.81[ASN][1000 genomes]
rs16921837	0.96[ASN][1000 genomes]
rs2162065	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs41313341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9695725	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055040	chr9:105264905-105355578	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv466452	chr9:105292037-105503137	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv615031	chr9:105292037-105503137	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1037741	chr9:105293524-105356714	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1043866	chr9:105299670-105500188	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv540183	chr9:105299670-105500188	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv973460	chr9:105326491-105371458	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv615032	chr9:105327595-105443560	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1052646	chr9:105341766-105459648	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv540184	chr9:105341766-105459648	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105349600-105351400	Weak transcription	Fetal Brain Male	brain
2	chr9:105350800-105351200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:105350800-105353800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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