Variant report

Variant rs12551623
Chromosome Location chr9:139948932-139948933
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:91 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:139947000-139949200 Bivalent Enhancer Primary B cells from peripheral blood blood
2 chr9:139947000-139951000 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
3 chr9:139947200-139949000 Bivalent Enhancer Spleen Spleen
4 chr9:139947200-139949200 Bivalent Enhancer Primary T cells fromperipheralblood blood
5 chr9:139947400-139949000 Bivalent Enhancer Skeletal Muscle Male skeletal muscle
6 chr9:139947400-139949200 Bivalent Enhancer H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr9:139947400-139949800 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
8 chr9:139947400-139950800 Bivalent Enhancer Adipose Nuclei Adipose
9 chr9:139947600-139949000 Flanking Active TSS Right Ventricle heart
10 chr9:139947600-139949200 Bivalent/Poised TSS HUES64 Cell Line embryonic stem cell
11 chr9:139947600-139949400 Bivalent/Poised TSS iPS-15b Cell Line embryonic stem cell
12 chr9:139947600-139950600 Enhancers Fetal Heart heart
13 chr9:139947800-139949000 Bivalent/Poised TSS HUES48 Cell Line embryonic stem cell
14 chr9:139947800-139949000 Flanking Bivalent TSS/Enh Primary T regulatory cells fromperipheralblood blood
15 chr9:139947800-139949000 Flanking Bivalent TSS/Enh Foreskin Fibroblast Primary Cells skin02 Skin
16 chr9:139947800-139949000 Flanking Bivalent TSS/Enh Foreskin Melanocyte Primary Cells skin01 Skin
17 chr9:139947800-139949200 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
18 chr9:139947800-139949200 Bivalent/Poised TSS iPS-18 Cell Line embryonic stem cell
19 chr9:139947800-139949200 Bivalent/Poised TSS iPS-20b Cell Line embryonic stem cell
20 chr9:139947800-139949200 Active TSS Pancreatic Islets Pancreatic Islet
21 chr9:139947800-139949400 Bivalent Enhancer Fetal Brain Male brain
22 chr9:139947800-139949600 Active TSS H9 Cell Line embryonic stem cell
23 chr9:139947800-139949600 Enhancers Cortex derived primary cultured neurospheres brain
24 chr9:139948000-139949000 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr9:139948000-139949000 Weak transcription Brain Substantia Nigra brain
26 chr9:139948000-139949000 Active TSS Gastric stomach
27 chr9:139948000-139949000 Active TSS Rectal Smooth Muscle rectum
28 chr9:139948000-139949000 Bivalent/Poised TSS Thymus Thymus
29 chr9:139948000-139949000 Active TSS A549 lung
30 chr9:139948000-139949600 Transcr. at gene 5' and 3' iPS DF 19.11 Cell Line embryonic stem cell
31 chr9:139948000-139949800 Active TSS HepG2 liver
32 chr9:139948000-139950400 Enhancers Lung lung
33 chr9:139948200-139949000 Bivalent/Poised TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
34 chr9:139948200-139949200 Active TSS K562 blood
35 chr9:139948400-139949000 Active TSS Primary T helper naive cells fromperipheralblood blood
36 chr9:139948400-139949000 Bivalent Enhancer Primary hematopoietic stem cells G-CSF-mobilized Female --
37 chr9:139948400-139949000 Bivalent Enhancer Brain Hippocampus Middle brain
38 chr9:139948400-139949000 Enhancers Placenta Amnion Placenta Amnion
39 chr9:139948400-139949000 Active TSS Sigmoid Colon Sigmoid Colon
40 chr9:139948400-139949400 Bivalent Enhancer Brain Cingulate Gyrus brain
41 chr9:139948400-139949800 Weak transcription ES-WA7 Cell Line embryonic stem cell
42 chr9:139948400-139950800 Enhancers Brain Anterior Caudate brain
43 chr9:139948400-139950800 Enhancers Left Ventricle heart
44 chr9:139948600-139949000 Bivalent Enhancer Primary hematopoietic stem cells short term culture blood
45 chr9:139948600-139949000 Enhancers Primary T helper 17 cells PMA-I stimulated --
46 chr9:139948600-139949000 Flanking Bivalent TSS/Enh Fetal Brain Female brain
47 chr9:139948600-139949000 Flanking Bivalent TSS/Enh Fetal Muscle Leg muscle
48 chr9:139948600-139949000 Active TSS Small Intestine intestine
49 chr9:139948600-139949200 Flanking Bivalent TSS/Enh ES-UCSF4 Cell Line embryonic stem cell
50 chr9:139948600-139949200 Flanking Bivalent TSS/Enh Fetal Stomach stomach

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