Variant report

Variant	rs12552158
Chromosome Location	chr9:95853390-95853391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:95853194..95855867-chr9:95863177..95866078,2	MCF-7	breast:
2	chr9:95816364..95826268-chr9:95852309..95863275,20	MCF-7	breast:
3	chr9:95838033..95840952-chr9:95852515..95855159,2	MCF-7	breast:
4	chr9:95852876..95854793-chr9:95906541..95909391,2	K562	blood:

Variant related genes	Relation type
ENSG00000203364	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10992619	0.82[CEU][hapmap]
rs10992621	0.82[CEU][hapmap]
rs10992646	1.00[ASN][1000 genomes]
rs10992647	1.00[ASN][1000 genomes]
rs10992649	1.00[ASN][1000 genomes]
rs10992650	1.00[ASN][1000 genomes]
rs10992651	1.00[ASN][1000 genomes]
rs10992654	1.00[ASN][1000 genomes]
rs10992656	1.00[ASN][1000 genomes]
rs10992657	1.00[ASN][1000 genomes]
rs10992661	1.00[ASN][1000 genomes]
rs10992699	1.00[ASN][1000 genomes]
rs12000967	1.00[ASN][1000 genomes]
rs12002458	1.00[ASN][1000 genomes]
rs12005950	1.00[ASN][1000 genomes]
rs13283550	1.00[ASN][1000 genomes]
rs13289160	1.00[ASN][1000 genomes]
rs1931364	1.00[ASN][1000 genomes]
rs35199621	1.00[ASN][1000 genomes]
rs4744213	1.00[ASN][1000 genomes]
rs55981123	1.00[ASN][1000 genomes]
rs6479471	1.00[ASN][1000 genomes]
rs7023262	1.00[ASN][1000 genomes]
rs7026999	1.00[ASN][1000 genomes]
rs7028691	0.82[CEU][hapmap]
rs7848843	1.00[ASN][1000 genomes]
rs7857220	1.00[ASN][1000 genomes]
rs7866300	1.00[ASN][1000 genomes]
rs7867954	1.00[ASN][1000 genomes]
rs7875384	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv1824329	chr9:95811604-95921347	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv893577	chr9:95812707-95872216	Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv893578	chr9:95818641-95887320	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95824600-95854000	Weak transcription	Gastric	stomach
2	chr9:95834400-95857400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:95836200-95855600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr9:95840400-95857000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:95844000-95853400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr9:95844800-95853400	Weak transcription	Colon Smooth Muscle	Colon
7	chr9:95845200-95857200	Weak transcription	Small Intestine	intestine
8	chr9:95845800-95854400	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:95845800-95854800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr9:95846200-95855000	Weak transcription	Fetal Lung	lung
11	chr9:95846400-95857000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:95848400-95854000	Weak transcription	Fetal Stomach	stomach
13	chr9:95848400-95854600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:95848400-95854800	Weak transcription	Fetal Intestine Large	intestine
15	chr9:95848400-95855000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:95848400-95855000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr9:95848400-95855400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr9:95848400-95855800	Weak transcription	Liver	Liver
19	chr9:95848600-95855000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:95848600-95857000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr9:95848800-95855400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:95848800-95855600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr9:95849400-95853600	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr9:95849400-95854400	Weak transcription	Primary hematopoietic stem cells	blood
25	chr9:95849400-95855200	Weak transcription	Fetal Kidney	kidney
26	chr9:95849400-95857400	Weak transcription	Ovary	ovary
27	chr9:95849600-95853400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr9:95849600-95853400	Weak transcription	A549	lung
29	chr9:95849600-95853800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:95849600-95854000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:95849600-95855000	Weak transcription	Colonic Mucosa	Colon
32	chr9:95849600-95855200	Weak transcription	Fetal Intestine Small	intestine
33	chr9:95849800-95854400	Weak transcription	Fetal Thymus	thymus
34	chr9:95850400-95855400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr9:95850600-95854000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:95851000-95853400	Weak transcription	Spleen	Spleen
37	chr9:95851000-95854400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr9:95851000-95855000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:95851200-95853600	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr9:95851400-95855200	Weak transcription	Thymus	Thymus
41	chr9:95851600-95854000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr9:95851600-95854800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:95851800-95855400	Weak transcription	K562	blood
44	chr9:95852000-95855000	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr9:95852200-95853400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:95852200-95855400	Weak transcription	Primary T cells from cord blood	blood
47	chr9:95852400-95853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:95852400-95854400	Weak transcription	Fetal Muscle Trunk	muscle
49	chr9:95852600-95853600	Weak transcription	HepG2	liver
50	chr9:95852600-95856800	Enhancers	Primary B cells from peripheral blood	blood

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