Variant report

Variant	rs12552617
Chromosome Location	chr9:8916280-8916281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1019955	0.89[EUR][1000 genomes]
rs10511511	0.90[EUR][1000 genomes]
rs12551425	0.90[EUR][1000 genomes]
rs12551480	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12551769	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12552171	0.90[EUR][1000 genomes]
rs12552175	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12552247	0.92[EUR][1000 genomes]
rs12554855	0.89[EUR][1000 genomes]
rs1433542	0.90[EUR][1000 genomes]
rs1897671	0.89[EUR][1000 genomes]
rs2016766	0.88[EUR][1000 genomes]
rs34657422	0.89[EUR][1000 genomes]
rs34958914	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35114587	0.89[EUR][1000 genomes]
rs57781824	0.92[EUR][1000 genomes]
rs59834115	0.92[EUR][1000 genomes]
rs7027460	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72704370	0.95[EUR][1000 genomes]
rs72704374	0.90[EUR][1000 genomes]
rs72704378	0.90[EUR][1000 genomes]
rs72704379	0.90[EUR][1000 genomes]
rs72704381	0.90[EUR][1000 genomes]
rs72706221	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs976385	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv892242	chr9:8879472-8941668	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2762789	chr9:8903357-9030039	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv613299	chr9:8903857-9032105	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1023691	chr9:8907952-9030627	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv539981	chr9:8907952-9030627	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8913800-8916800	Enhancers	Brain Angular Gyrus	brain
2	chr9:8913800-8916800	Enhancers	Brain Substantia Nigra	brain
3	chr9:8913800-8918400	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr9:8914800-8916800	Enhancers	Brain Hippocampus Middle	brain
5	chr9:8915400-8916400	Weak transcription	Brain Anterior Caudate	brain
6	chr9:8915600-8918200	Enhancers	Brain Cingulate Gyrus	brain

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