Variant report

Variant	rs12554547
Chromosome Location	chr9:116887245-116887246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2002284	0.80[EUR][1000 genomes]
rs2567702	0.83[EUR][1000 genomes]
rs2808769	0.83[EUR][1000 genomes]
rs4436196	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430093	chr9:116330446-117325446	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	esv2422396	chr9:116792944-117354862	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
3	esv2422492	chr9:116811294-117366643	Genic enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	155 gene(s)	inside rSNPs	diseases
4	esv2761285	chr9:116811897-117103268	Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
5	nsv870215	chr9:116842614-117070344	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	124 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:116879600-116888600	Enhancers	Stomach Mucosa	stomach
2	chr9:116882000-116888000	Weak transcription	Spleen	Spleen
3	chr9:116882800-116889200	Weak transcription	Gastric	stomach
4	chr9:116884000-116888000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:116885400-116889000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:116885600-116887600	Enhancers	Fetal Intestine Small	intestine
7	chr9:116885600-116888800	Enhancers	Fetal Heart	heart
8	chr9:116886000-116888000	Enhancers	Left Ventricle	heart
9	chr9:116886200-116887400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:116886400-116887400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:116886400-116888000	Enhancers	HepG2	liver
12	chr9:116886400-116888200	Enhancers	Fetal Lung	lung
13	chr9:116886800-116887600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr9:116886800-116888800	Weak transcription	Placenta	Placenta
15	chr9:116886800-116889000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:116887000-116887800	Bivalent Enhancer	Fetal Muscle Trunk	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links