Variant report

Variant	rs12555283
Chromosome Location	chr9:8872771-8872772
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12555691	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17584499	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8869000-8873800	Enhancers	Brain Cingulate Gyrus	brain
2	chr9:8869400-8876200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:8869800-8874000	Enhancers	Brain Angular Gyrus	brain
4	chr9:8870000-8874400	Weak transcription	Left Ventricle	heart
5	chr9:8870800-8873000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr9:8870800-8874000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:8871000-8876000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:8871000-8879800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr9:8871200-8874400	Weak transcription	Right Ventricle	heart
10	chr9:8871200-8875600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:8871400-8873000	Enhancers	Brain Anterior Caudate	brain
12	chr9:8871400-8873400	Enhancers	Brain Substantia Nigra	brain
13	chr9:8871400-8883000	Weak transcription	Fetal Intestine Small	intestine
14	chr9:8871800-8873200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:8872000-8873200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr9:8872000-8873200	Enhancers	Fetal Muscle Leg	muscle
17	chr9:8872000-8873400	Enhancers	Fetal Heart	heart
18	chr9:8872200-8873800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr9:8872400-8872800	Weak transcription	Right Atrium	heart
20	chr9:8872400-8873000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:8872400-8873000	Weak transcription	Aorta	Aorta
22	chr9:8872400-8873200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:8872400-8873200	Enhancers	Brain Hippocampus Middle	brain
24	chr9:8872400-8873800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:8872400-8876200	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:8872600-8873000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links