Variant report

Variant	rs12555482
Chromosome Location	chr9:86769116-86769117
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10746732	1.00[ASN][1000 genomes]
rs1436935	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893515	chr9:86693912-86834719	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv8542	chr9:86749300-87074910	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1045909	chr9:86758840-87456096	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1048977	chr9:86764112-87430491	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:86767600-86769200	Enhancers	HUVEC	blood vessel
2	chr9:86768200-86770000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr9:86768400-86769200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:86768400-86769800	Enhancers	NH-A	brain
5	chr9:86768400-86769800	Enhancers	Osteobl	bone
6	chr9:86768600-86769800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:86768600-86769800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:86768600-86770000	Enhancers	NHDF-Ad	bronchial
9	chr9:86768800-86769400	Enhancers	Stomach Mucosa	stomach
10	chr9:86768800-86769600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:86768800-86769600	Enhancers	NHLF	lung
12	chr9:86768800-86769800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:86768800-86769800	Enhancers	HSMM	muscle
14	chr9:86768800-86770000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:86769000-86769400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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