Variant report

Variant	rs1255760
Chromosome Location	chr14:63987005-63987006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:63971912..63974068-chr14:63985284..63988078,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1152448	1.00[AMR][1000 genomes]
rs1152450	1.00[AMR][1000 genomes]
rs1255755	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1255758	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1255759	1.00[AMR][1000 genomes]
rs59443470	1.00[AMR][1000 genomes]
rs7160892	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63951000-64003200	Weak transcription	Ovary	ovary
2	chr14:63960000-64005000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr14:63960200-64008600	Weak transcription	HSMMtube	muscle
4	chr14:63960400-63991000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:63962800-63990600	Weak transcription	Right Ventricle	heart
6	chr14:63964000-63990400	Weak transcription	Fetal Kidney	kidney
7	chr14:63967600-63996400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:63969200-63991200	Weak transcription	Right Atrium	heart
9	chr14:63970200-64008600	Weak transcription	Aorta	Aorta
10	chr14:63970800-63990600	Weak transcription	Brain Anterior Caudate	brain
11	chr14:63971200-64000800	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:63972000-64000200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr14:63972200-64003400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:63972400-64002800	Weak transcription	HMEC	breast
15	chr14:63972600-64008800	Weak transcription	Esophagus	oesophagus
16	chr14:63974000-63989200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:63974000-63990600	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:63974800-64007800	Weak transcription	Fetal Brain Male	brain
19	chr14:63975000-63990600	Weak transcription	Brain Angular Gyrus	brain
20	chr14:63975000-63991200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:63975000-64008800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr14:63975200-64000600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:63975600-64005800	Weak transcription	K562	blood
24	chr14:63977200-64002400	Weak transcription	HSMM	muscle
25	chr14:63977400-63989200	Weak transcription	Fetal Intestine Large	intestine
26	chr14:63978000-63991000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:63978200-63987200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr14:63978200-63987200	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:63978200-63987200	Weak transcription	Dnd41	blood
30	chr14:63978200-63990600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr14:63978200-63990600	Weak transcription	HepG2	liver
32	chr14:63978200-63991200	Weak transcription	Pancreas	Pancrea
33	chr14:63978200-63993200	Weak transcription	Thymus	Thymus
34	chr14:63978400-63990600	Weak transcription	Primary B cells from cord blood	blood
35	chr14:63978400-63991000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr14:63978400-63991000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:63978400-63999400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr14:63978600-63987200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:63978600-63991000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr14:63978800-63992800	Weak transcription	Fetal Thymus	thymus
41	chr14:63978800-63993200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:63979200-64002600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr14:63980800-63990600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr14:63980800-63990600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:63980800-63991000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr14:63980800-63991000	Weak transcription	Psoas Muscle	Psoas
47	chr14:63980800-63991600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr14:63980800-64000400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr14:63980800-64008000	Weak transcription	Small Intestine	intestine
50	chr14:63981000-63988000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links