Variant report

Variant	rs1255857
Chromosome Location	chr14:64411355-64411356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64407990..64410133-chr14:64411071..64414129,3	MCF-7	breast:
2	chr14:64402738..64405329-chr14:64411303..64414012,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11623650	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1255856	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1255867	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1255869	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1255872	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1255873	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1255874	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1255875	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1255876	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1255877	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1255878	0.81[EUR][1000 genomes]
rs1255879	0.81[EUR][1000 genomes]
rs1255880	0.81[EUR][1000 genomes]
rs1255881	0.81[EUR][1000 genomes]
rs1255883	0.81[EUR][1000 genomes]
rs1255885	0.81[EUR][1000 genomes]
rs1255887	0.81[EUR][1000 genomes]
rs1255896	0.80[EUR][1000 genomes]
rs1262235	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1266870	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1270051	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1270526	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1273192	0.81[EUR][1000 genomes]
rs12878653	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2184292	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2357175	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2357176	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2792201	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2884111	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2994421	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2994422	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35224808	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61984073	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7156570	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9323442	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323443	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs945027	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs945028	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64365000-64430200	Weak transcription	Fetal Brain Male	brain
2	chr14:64376000-64416200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:64378000-64416200	Weak transcription	Fetal Lung	lung
4	chr14:64378400-64416000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:64387000-64416400	Weak transcription	Aorta	Aorta
6	chr14:64390200-64416400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr14:64390600-64418800	Weak transcription	HepG2	liver
8	chr14:64393200-64419800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr14:64393800-64414800	Weak transcription	Fetal Muscle Leg	muscle
10	chr14:64395000-64491000	Weak transcription	Psoas Muscle	Psoas
11	chr14:64396000-64418600	Weak transcription	Fetal Heart	heart
12	chr14:64400000-64416400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr14:64400000-64419800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr14:64400800-64417800	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:64401000-64416200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr14:64401000-64416400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr14:64401400-64430200	Weak transcription	Stomach Mucosa	stomach
18	chr14:64401600-64416600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64401600-64427800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr14:64403600-64432800	Weak transcription	Lung	lung
21	chr14:64404200-64416200	Weak transcription	Right Ventricle	heart
22	chr14:64404200-64416600	Weak transcription	Adipose Nuclei	Adipose
23	chr14:64405000-64423400	Weak transcription	HSMM	muscle
24	chr14:64405600-64416200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:64405600-64416200	Weak transcription	NHEK	skin
26	chr14:64405600-64418800	Weak transcription	HMEC	breast
27	chr14:64405800-64416200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:64405800-64418800	Weak transcription	Small Intestine	intestine
29	chr14:64406000-64416200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:64406000-64416600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:64406000-64416600	Weak transcription	Gastric	stomach
32	chr14:64406000-64416600	Weak transcription	Pancreas	Pancrea
33	chr14:64406000-64416600	Weak transcription	Spleen	Spleen
34	chr14:64406200-64434400	Weak transcription	Hela-S3	cervix
35	chr14:64407200-64416000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:64407200-64418800	Weak transcription	HUVEC	blood vessel
37	chr14:64408200-64416200	Weak transcription	Esophagus	oesophagus
38	chr14:64408200-64432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:64408400-64415800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr14:64408400-64430200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr14:64408800-64412000	Weak transcription	Primary T helper cells PMA-I stimulated	--
42	chr14:64408800-64416200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr14:64408800-64416600	Weak transcription	Primary T cells from cord blood	blood
44	chr14:64409000-64417800	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:64409200-64416000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr14:64409200-64416200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr14:64409200-64416400	Weak transcription	Fetal Brain Female	brain
48	chr14:64409200-64416600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:64409600-64412400	Weak transcription	Fetal Intestine Small	intestine
50	chr14:64409800-64412400	Weak transcription	Fetal Stomach	stomach

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