Variant report

Variant	rs12559958
Chromosome Location	chrX:29953951-29953952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12847035	1.00[CHB][hapmap]
rs12860931	1.00[CHB][hapmap]
rs17885035	1.00[CHB][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869408	chrX:29619835-30341063	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3334028	chrX:29928156-30104332	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3401634	chrX:29933931-29989429	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:29938400-29954200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chrX:29952200-29955200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chrX:29952800-29955600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chrX:29953000-29955400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chrX:29953200-29954000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chrX:29953200-29956000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chrX:29953200-29956000	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chrX:29953400-29954800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chrX:29953400-29955400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chrX:29953600-29954000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chrX:29953800-29954800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chrX:29953800-29955000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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