Variant report

Variant	rs12560899
Chromosome Location	chr6:46092296-46092297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12050064	0.82[EUR][1000 genomes]
rs1475296	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16953068	0.82[EUR][1000 genomes]
rs1925115	0.82[EUR][1000 genomes]
rs4771932	0.82[EUR][1000 genomes]
rs4771935	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4771936	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6491285	0.80[EUR][1000 genomes]
rs7328493	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7981845	0.81[EUR][1000 genomes]
rs927710	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9554345	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9556551	0.82[EUR][1000 genomes]
rs9556554	0.82[EUR][1000 genomes]
rs9556555	0.82[EUR][1000 genomes]
rs9556567	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9556570	0.81[EUR][1000 genomes]
rs9556574	0.82[EUR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46080200-46095600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr6:46080600-46095400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:46081600-46096400	Weak transcription	Thymus	Thymus
4	chr6:46083000-46096200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:46087400-46095400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:46087400-46095600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:46087400-46097000	Weak transcription	Aorta	Aorta
8	chr6:46088000-46094800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr6:46088200-46093400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:46088400-46095600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:46088400-46095600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:46092200-46093600	Weak transcription	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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