Variant report

Variant	rs12562148
Chromosome Location	chr1:151584608-151584609
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:151510726..151515686-chr1:151583230..151586215,6	MCF-7	breast:
2	chr1:114447837..114448427-chr1:151583823..151584662,2	Hela-S3	cervix:
3	chr1:151583806..151586204-chr1:151610936..151612672,2	MCF-7	breast:
4	chr1:151509848..151514263-chr1:151581077..151585541,5	MCF-7	breast:
5	chr1:151430633..151432391-chr1:151583582..151586341,2	MCF-7	breast:
6	chr1:151582188..151584894-chr1:151679011..151681614,2	MCF-7	breast:
7	chr1:151583249..151586152-chr1:151761338..151763937,3	K562	blood:
8	chr1:151583782..151586135-chr6:26156499..26159013,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232536	Chromatin interaction
ENSG00000203288	Chromatin interaction
ENSG00000118655	Chromatin interaction
ENSG00000143442	Chromatin interaction
ENSG00000159409	Chromatin interaction
ENSG00000143376	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000143367	Chromatin interaction
ENSG00000182134	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997511	chr1:151491765-151595902	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	esv3354758	chr1:151583553-151586301	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151583800-151586800	Active TSS	GM12878-XiMat	blood
2	chr1:151584000-151585000	Active TSS	Primary B cells from cord blood	blood
3	chr1:151584000-151585200	Active TSS	Adipose Nuclei	Adipose
4	chr1:151584000-151585400	Active TSS	Primary hematopoietic stem cells	blood
5	chr1:151584000-151585400	Active TSS	Thymus	Thymus
6	chr1:151584000-151585600	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr1:151584000-151585600	Active TSS	Monocytes-CD14+_RO01746	blood
8	chr1:151584000-151586000	Active TSS	Fetal Brain Male	brain
9	chr1:151584000-151586400	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr1:151584000-151586600	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr1:151584200-151585000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:151584200-151585200	Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr1:151584200-151585200	Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr1:151584200-151585200	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
15	chr1:151584200-151585200	Active TSS	Liver	Liver
16	chr1:151584200-151585200	Active TSS	Fetal Brain Female	brain
17	chr1:151584200-151585200	Active TSS	Skeletal Muscle Male	skeletal muscle
18	chr1:151584200-151585200	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr1:151584200-151585200	Active TSS	HepG2	liver
20	chr1:151584200-151585400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:151584200-151585400	Active TSS	Brain Anterior Caudate	brain
22	chr1:151584200-151585400	Active TSS	Duodenum Mucosa	Duodenum
23	chr1:151584200-151585400	Active TSS	Pancreas	Pancrea
24	chr1:151584200-151585600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:151584200-151585600	Active TSS	Brain Cingulate Gyrus	brain
26	chr1:151584200-151585600	Active TSS	Brain Substantia Nigra	brain
27	chr1:151584200-151585600	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr1:151584200-151585800	Active TSS	Ovary	ovary
29	chr1:151584200-151586200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr1:151584200-151586400	Active TSS	ES-I3 Cell Line	embryonic stem cell
31	chr1:151584200-151586400	Active TSS	Fetal Lung	lung
32	chr1:151584200-151586400	Active TSS	Fetal Muscle Trunk	muscle
33	chr1:151584200-151586400	Active TSS	Rectal Smooth Muscle	rectum
34	chr1:151584200-151586400	Active TSS	HSMMtube	muscle
35	chr1:151584200-151586600	Active TSS	Brain Inferior Temporal Lobe	brain
36	chr1:151584200-151586600	Active TSS	Colon Smooth Muscle	Colon
37	chr1:151584200-151586600	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr1:151584200-151586600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr1:151584200-151586800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
40	chr1:151584200-151586800	Active TSS	Fetal Kidney	kidney
41	chr1:151584400-151585200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr1:151584400-151585200	Active TSS	Primary B cells from peripheral blood	blood
43	chr1:151584400-151585200	Active TSS	Primary T cells fromperipheralblood	blood
44	chr1:151584400-151585200	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
45	chr1:151584400-151585200	Active TSS	Primary T helper naive cells from peripheral blood	blood
46	chr1:151584400-151585200	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr1:151584400-151585200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr1:151584400-151585200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr1:151584400-151585200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:151584400-151585200	Active TSS	Dnd41	blood

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