Variant report

No.	Distal block	Cell Line	Cell type
1	chr14:65729648..65732432-chr14:65936624..65938287,2	MCF-7	breast:
2	chr14:65721905..65725444-chr14:65725472..65730269,4	MCF-7	breast:
3	chr14:65708443..65711390-chr14:65727270..65732025,4	MCF-7	breast:
4	chr14:65729591..65731339-chr14:65877885..65879883,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction
ENSG00000207781	Chromatin interaction

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1256506	1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660690	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28682981	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56862744	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57351988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65727200-65735000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr14:65727400-65749600	Weak transcription	Gastric	stomach
5	chr14:65729800-65730600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:65729800-65730600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr14:65729800-65730600	Enhancers	Stomach Mucosa	stomach
8	chr14:65729800-65731000	Enhancers	Fetal Intestine Large	intestine
9	chr14:65729800-65731000	Enhancers	Fetal Intestine Small	intestine
10	chr14:65730000-65730400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:65730000-65730400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:65730000-65730400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:65730000-65730400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:65730000-65730400	Enhancers	HUVEC	blood vessel
15	chr14:65730000-65730400	Enhancers	K562	blood
16	chr14:65730000-65730400	Enhancers	NH-A	brain
17	chr14:65730000-65730400	Enhancers	NHDF-Ad	bronchial
18	chr14:65730000-65730600	Enhancers	HSMM	muscle
19	chr14:65730200-65734400	Weak transcription	Pancreas	Pancrea
20	chr14:65730200-65734600	Weak transcription	HepG2	liver

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