Variant report

Variant	rs12565940
Chromosome Location	chr1:85180376-85180377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85155315..85160651-chr1:85179679..85182911,5	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

rs_ID	r²[population]
rs12562661	1.00[JPT][hapmap]
rs3768249	1.00[CHB][hapmap]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
2	chr1:85174000-85180400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr1:85175000-85184200	Weak transcription	Fetal Intestine Large	intestine
4	chr1:85176000-85181400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:85176200-85181200	Weak transcription	Brain Angular Gyrus	brain
6	chr1:85177000-85181000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:85177000-85183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr1:85177200-85181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:85177200-85181800	Enhancers	Fetal Brain Male	brain
10	chr1:85178000-85185200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr1:85178400-85180800	Weak transcription	Colon Smooth Muscle	Colon
12	chr1:85178400-85181200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr1:85178600-85181200	Weak transcription	Stomach Mucosa	stomach
14	chr1:85178600-85185000	Weak transcription	NH-A	brain
15	chr1:85178800-85181200	Weak transcription	K562	blood
16	chr1:85178800-85184600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:85178800-85184800	Weak transcription	NHLF	lung
18	chr1:85178800-85185600	Weak transcription	Osteobl	bone
19	chr1:85179000-85181200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:85179600-85182200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr1:85179600-85182200	Enhancers	Fetal Brain Female	brain
22	chr1:85179600-85185000	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr1:85180000-85181600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:85180000-85182200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr1:85180200-85184800	Weak transcription	H9 Cell Line	embryonic stem cell

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