Variant report

Variant	rs12568251
Chromosome Location	chr1:186259800-186259801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12749865	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs33937627	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34926202	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35877985	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55884850	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61831146	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1004481	chr1:186095854-186750968	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv535223	chr1:186095854-186750968	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:186256800-186260200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr1:186256800-186260400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr1:186257000-186259800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr1:186257000-186260000	Enhancers	Primary T cells from cord blood	blood
5	chr1:186257000-186260000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:186257000-186260000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr1:186257200-186262000	Weak transcription	Thymus	Thymus
8	chr1:186257400-186260400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr1:186257600-186260000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:186258400-186261200	Enhancers	Hela-S3	cervix
11	chr1:186258800-186260600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:186259000-186262600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr1:186259000-186270400	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:186259200-186260000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:186259400-186259800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:186259600-186259800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:186259600-186259800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr1:186259600-186260000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr1:186259600-186260000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr1:186259600-186273600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr1:186259800-186268400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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