Variant report

Variant	rs12569179
Chromosome Location	chr1:155041181-155041182
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:154897126..154900008-chr1:155040809..155042688,2	MCF-7	breast:
2	chr1:155041145..155043356-chr1:155099387..155102342,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169242	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11465207	1.00[MEX][hapmap]
rs12045370	1.00[MEX][hapmap]
rs1611772	1.00[MEX][hapmap]
rs2306122	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155036800-155042800	Weak transcription	Left Ventricle	heart
2	chr1:155036800-155042800	Weak transcription	Psoas Muscle	Psoas
3	chr1:155037000-155041200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:155037000-155041800	Weak transcription	Fetal Brain Female	brain
5	chr1:155037000-155042000	Weak transcription	Brain Anterior Caudate	brain
6	chr1:155037000-155042000	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:155037000-155042000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:155037000-155042200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr1:155037000-155042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:155037000-155042400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr1:155037000-155042400	Weak transcription	Right Ventricle	heart
12	chr1:155037000-155042600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:155037200-155041600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr1:155037200-155042600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:155037200-155042800	Weak transcription	Adipose Nuclei	Adipose
16	chr1:155037200-155042800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr1:155037200-155043000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr1:155037200-155043000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr1:155037200-155043000	Weak transcription	HSMM	muscle
20	chr1:155037200-155043000	Weak transcription	NHDF-Ad	bronchial
21	chr1:155037200-155043000	Weak transcription	NHLF	lung
22	chr1:155037400-155041200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr1:155037400-155041200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr1:155037400-155041600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:155037400-155042000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr1:155037400-155042400	Weak transcription	Fetal Thymus	thymus
27	chr1:155037400-155042600	Weak transcription	Fetal Heart	heart
28	chr1:155037400-155042800	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:155037400-155043000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr1:155037400-155043000	Weak transcription	Osteobl	bone
31	chr1:155037600-155041200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr1:155037600-155042000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr1:155037600-155042200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr1:155037600-155042400	Weak transcription	Stomach Mucosa	stomach
35	chr1:155037600-155042600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:155037600-155042800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
37	chr1:155037600-155043000	Weak transcription	Fetal Kidney	kidney
38	chr1:155037600-155043000	Weak transcription	GM12878-XiMat	blood
39	chr1:155037600-155043000	Weak transcription	NHEK	skin
40	chr1:155037600-155043200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:155037800-155042000	Weak transcription	A549	lung
42	chr1:155037800-155042200	Weak transcription	K562	blood
43	chr1:155037800-155042400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr1:155037800-155042400	Genic enhancers	Fetal Intestine Small	intestine
45	chr1:155037800-155042400	Weak transcription	Small Intestine	intestine
46	chr1:155037800-155042600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr1:155037800-155042800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr1:155037800-155042800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr1:155037800-155042800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr1:155037800-155043000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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