Variant report

Variant	rs12569195
Chromosome Location	chr1:210104501-210104502
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:210103690..210106151-chr1:210106770..210109170,2	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1040424	0.87[EUR][1000 genomes]
rs1040426	0.87[EUR][1000 genomes]
rs10489346	0.87[EUR][1000 genomes]
rs10779521	0.87[EUR][1000 genomes]
rs10863800	0.87[EUR][1000 genomes]
rs10863809	0.87[EUR][1000 genomes]
rs11119373	0.87[EUR][1000 genomes]
rs11119384	0.87[EUR][1000 genomes]
rs11119388	0.87[EUR][1000 genomes]
rs11119394	0.87[EUR][1000 genomes]
rs11119398	0.87[EUR][1000 genomes]
rs11119403	0.87[EUR][1000 genomes]
rs11119417	0.87[EUR][1000 genomes]
rs12059828	0.87[EUR][1000 genomes]
rs12061641	0.87[EUR][1000 genomes]
rs12073617	0.87[EUR][1000 genomes]
rs12078802	0.87[EUR][1000 genomes]
rs12079916	0.87[EUR][1000 genomes]
rs12084199	0.87[EUR][1000 genomes]
rs12089327	0.87[EUR][1000 genomes]
rs12092527	0.87[EUR][1000 genomes]
rs12094626	0.87[EUR][1000 genomes]
rs12354000	0.87[EUR][1000 genomes]
rs12405519	0.87[EUR][1000 genomes]
rs12405601	0.87[EUR][1000 genomes]
rs12409047	0.87[EUR][1000 genomes]
rs12561877	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12563982	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12565072	0.87[EUR][1000 genomes]
rs12565234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12565533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12566616	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12567184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12567185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1387932	0.87[EUR][1000 genomes]
rs17015564	0.87[EUR][1000 genomes]
rs17015565	0.87[EUR][1000 genomes]
rs17015566	0.87[EUR][1000 genomes]
rs17015667	0.87[EUR][1000 genomes]
rs35163211	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4144930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4844501	0.87[EUR][1000 genomes]
rs4844502	0.87[EUR][1000 genomes]
rs4844916	0.87[EUR][1000 genomes]
rs4844923	0.87[EUR][1000 genomes]
rs4844935	0.87[EUR][1000 genomes]
rs4844937	0.87[EUR][1000 genomes]
rs4844938	0.87[EUR][1000 genomes]
rs4844939	0.87[EUR][1000 genomes]
rs4844940	0.87[EUR][1000 genomes]
rs4844941	0.87[EUR][1000 genomes]
rs4844942	0.87[EUR][1000 genomes]
rs4844943	0.87[EUR][1000 genomes]
rs4844944	0.87[EUR][1000 genomes]
rs57891047	1.00[AMR][1000 genomes]
rs713114	0.87[EUR][1000 genomes]
rs72468062	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72649911	1.00[EUR][1000 genomes]
rs72649912	0.87[EUR][1000 genomes]
rs72649913	0.87[EUR][1000 genomes]
rs72649914	0.87[EUR][1000 genomes]
rs72649920	0.87[EUR][1000 genomes]
rs72649921	0.87[EUR][1000 genomes]
rs72649922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72649923	0.87[EUR][1000 genomes]
rs72649924	0.87[EUR][1000 genomes]
rs72649925	0.87[EUR][1000 genomes]
rs72649926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72649927	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72649928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72649929	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72649930	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72649931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72649932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72649933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72649934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72649935	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72649936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72649937	0.87[EUR][1000 genomes]
rs72649938	0.87[EUR][1000 genomes]
rs72649939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649940	0.87[EUR][1000 genomes]
rs72649941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649943	1.00[AMR][1000 genomes]
rs72649944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649948	0.87[EUR][1000 genomes]
rs72649949	0.87[EUR][1000 genomes]
rs72649950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649953	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72649955	0.87[EUR][1000 genomes]
rs760768	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873140	chr1:210068117-210335644	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1844866	chr1:210078078-210108473	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1825811	chr1:210082206-210135806	Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210100200-210107800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:210104200-210105400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:210104400-210105400	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:210104400-210105600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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